Top in Japan
Last | Rank | Game Title | Publisher | System | Genre | Units Sold | Total Sold |
| -- | 1 | Eithea | Atlus | PS | RPG | 34,280 | 34,280 |
| 1 | 2 | Onimusha | Capcom | PS2 | A.AVG | 20,255 | 844,977 |
| -- | 3 | NBA Live 2001 | EA Square | PS2 | SPT | 20,136 | 20,136 |
| 2 | 4 | Pocket Monster Crystal | Nintendo | GB | RPG | 18,044 | 1,358,690 |
| -- | 5 | Eithea (Limited Edition) | Atlus | PS | RPG | 14,693 | 14,693 |
| -- | 6 | Kuusen | Kadokawa Shoten | PS2 | FLG | 12,635 | 12,635 |
| -- | 7 | Macross M3 (Limited Box) | Shoeisha | DC | STG | 10,509 | 10,509 |
| -- | 8 | Shadow of Memories | Konami | PS2 | AVG | 10,445 | 10,445 |
| 3 | 9 | Donkey Kong 2001 | Nintendo | GB | ACT | 9,967 | 138,394 |
| 7 | 10 | Victorious Boxers | ESP | PS2 | SPT | 8,762 | 264,688 |
| -- | 11 | Tsugunai (Compensation) | Sony | PS2 | RPG | 8,508 | 8,508 |
| 9 | 12 | Dragon Quest III | Enix | GB | RPG | 8,475 | 518,478 |
| -- | 13 | Muscular Ranking GB3 | Konami | GB | SPT | 7,975 | 7,975 |
| 8 | 14 | Pocket Monster Stadium Gold & Silver | Nintendo | N64 | SLG | 7,144 | 510,058 |
| 10 | 15 | Pachisuro Aruze Kingdom | Aruze | PS | TBG | 6,992 | 418,121 |
| -- | 16 | Rhapsody of Zephyr | SoftMax | DC | RPG | 6,433 | 6,433 |
| 5 | 17 | J-Phoenix Prologue Volume | Takara | PS2 | ACT | 5,638 | 17,073 |
| -- | 18 | Volfoss | Namco | PS | SRPG | 5,425 | 5,425 |
| -- | 19 | Pocket Digimon World: Cool & Nature Battle Disc | Bandai | PS | RPG | 5,305 | 5,305 |
| -- | 20 | Adventure of Silly Go Lucky | Capcom | GB | ETC | 5,243 | 5,243 |
| 16 | 21 | Simple 1500 Series Vol. 39 The Mahjong 2 | D3 Publisher | PS | TBG | 4,882 | 113,724 |
| 15 | 22 | Tales of Eternia | Namco | PS | RPG | 4,627 | 665,225 |
| 23 | 23 | Final Fantasy | Square | WSC | RPG | 4,373 | 395,336 |
| 19 | 24 | Mario Pary 3 | Nintendo | N64 | TBG | 4,334 | 908,285 |
| 12 | 25 | Space Venus Starring Morning Musume | SME | PS2 | ETC | 4,334 | 148,885 |
| -- | 26 | Pocket King | Namco | GB | SLG | 4,329 | 4,329 |
| 21 | 27 | Mario Tennis GB | Nintendo | GB | SPT | 4,089 | 397,986 |
| 14 | 28 | Yugioh Duel Monsters IV: Strongest Duel Senki: Shizuka's Deck | Konami | GB | CRD | 3,863 | 600,539 |
| 32 | 29 | Simple 1500 Series Vol. 54 The Volleyball | D3 Publisher | PS | SPT | 3,845 | 22,849 |
| -- | 30 | Super Robot Pinball | Media Factory | GB | TBG | 3,814 | 3,814 |
| 13 | 31 | Yugioh Duel Monsters IV: Strongest Duel Senki: Yugi's Deck | Konami | GB | CRD | 3,763 | 815,654 |
| 22 | 32 | Final Fantasy IX | Square | PS | RPG | 3,625 | 2,755,667 |
| 18 | 33 | Mickey's Racking Challenge USA | Nintendo | N64 | RAC | 3,544 | 63,303 |
| 23 | 34 | Hamster Tarous | Nintendo | GB | BSLG | 3,533 | 355,726 |
| 17 | 35 | Panzer Front Biz | Enterbrain | PS | SLG | 3,482 | 28,516 |
| 30 | 36 | Romance of Three Kingdoms VII | Koei | PS | SLG | 3,336 | 24,188 |
| 31 | 37 | Dragon Quest VII: Soldiers in Eden | Enix | PS | RPG | 3,335 | 3,850,213 |
| 33 | 38 | Everybody's Golf 2 (The Best) | Sony | PS | SPT | 3,231 | 219,306 |
| 11 | 39 | Mobile Suit Gundam | Bandai | PS2 | ACT | 3,096 | 393,447 |
| 27 | 40 | Jikkyou Powerful Pro Baseball 2000 Definitive Edition | Konami | PS | SPT | 3,045 | 140,599 |
| 48 | 41 | Simple 1500 Series Vol.53 The Helicopter | D3 Publisher | PS | SLG | 3,027 | 45,329 |
| 37 | 42 | Mario Tennis 64 | Nintendo | N64 | SPT | 2,967 | 880,095 |
| 24 | 43 | Jikkyou Powerful Pro Baseball 7 Definitive Edition | Konami | PS2 | SPT | 2,966 | 90,757 |
| 34 | 44 | Bomberman Land | Hudson | PS | ACT | 2,920 | 145,064 |
| 20 | 45 | The Bouncer | Square | PS2 | ACT | 2,838 | 349,212 |
| 53 | 46 | Metal Slug X | SNK | PS | ACT | 2,791 | 39,338 |
| 46 | 47 | Custom Robo V2 | Nintendo | N64 | ACT | 2,789 | 247,205 |
| 26 | 48 | Yugioh Duel Monsters IV: Strongest Duel Senki: Keiba's Deck | Konami | GB | CRD | 2,775 | 608,809 |
| 38 | 49 | Simple 1500 Series Vol. 40 The Japanese Chess 2 | D3 Publisher | PS | TBG | 2,691 | 64,233 |
| 40 | 50 | Mobile Suit Gundam Vol. 1 - Side 7 | Bandai | WSC | AVG | 2,503 | 35,446 |
